Phenotyping workgroup

Objective:

To build and evaluate a computational pipeline for electronic phenotyping – which defines criteria to algorithmically select sets of patients based on stored clinical data – in the OHDSI project. Our approach for learning statistical models of clinical phenotypes is called XPRESS, which stands for eXtraction of Phenotypes from clinical REcords using Silver Standards.

Project Leads: Nigam Shah, MBBS, PhD

The plan:

  • Jan 2015: final XPRESS pipeline ready
  • March 2015: 10 models built
  • May 2015: Test portability of 10 models
  • July 2015: Run the XPRESS vs. “queries” comparison at a non-stanford site.
  • Oct 2015: Decide the approach to use in OHDSI

The Participants:

  • Juan Banda
  • Vibhu Agarwal
  • George Hripsack (+ Barnett Chiu, Sunny Chang)
  • Nicholas Tatonetti (+ Alexandre Yahi)
  • Jon Duke (+ Saeed Malas)

Start Date: January 2015.

Repository: https://github.com/OHDSI/Aphrodite

WG Minutes and Agendas:

https://docs.google.com/document/d/1TmpRQ7YulvlESwpXUdVSSuNDROQSenWLgN6xp5OCN5I/edit?usp=sharing

WG Video Call Recording:

October 15th, 2015
October 1st, 2015
September 17th, 2015

Meetings

Schedule: Every 2nd week on Thursday • from September 17, 2015 • 9 a.m. PDT / 1 hr

To join the Meeting: https://bluejeans.com/286365503

To join via Browser: https://bluejeans.com/286365503/browser

To join with Lync: https://bluejeans.com/286365503/lync

To join via Cisco Jabber Video: https://bluejeans.com/286365503/jabber

To join via Room System: Video Conferencing System: bjn.vc -or- 199.48.152.152 Meeting ID: 286365503

To join via Phone:
1) Dial:
+1 408 740 7256
+1 888 240 2560(US Toll Free)
+1 408 317 9253(Alternate Number) - (see all numbers - http://bluejeans.com/numbers)
2) Enter Conference ID: 286365503

Minutes and Agendas

https://docs.google.com/document/d/1TmpRQ7YulvlESwpXUdVSSuNDROQSenWLgN6xp5OCN5I/edit?usp=sharing

Discussions