Gold Standard Phenotype Library Workgroup

Objective: To enable members of the OHDSI community to find, evaluate, and utilize community-validated cohort definitions for research and other activities. These “gold standard” definitions will reside in a library, the entries of which are held to specific standards of design and evaluation. These standards are what this working group is ultimately working to establish, as well as the instantiation of the library itself.

To achieve the above objective, we are focusing on the following Subtasks:

  1. Design: Rule-Based (Heuristic) Phenotypes
  2. Design: Computable (Probabilistic) Phenotypes
  3. Evaluation: Manual Chart Review / Annotations
  4. Evaluation: Automated / Algorithmic
  5. Library Architecture and Implementation

Each subtask has a Task Leader:

  1. TBD
  2. Juan Banda
  3. Seng Chan You
  4. Joel Swerdel
  5. Aaron Potvien

All Members:

  • Aaron Potvien (Lead)
  • Anastasios Siapos
  • Andrew Williams
  • Anna Ostropolets
  • Austin Himschoot
  • Jeff Ratto
  • Jill Hardin
  • Joel Swerdel
  • Jon Duke
  • Juan Banda
  • Kimberly Houston
  • Kristin Kostka
  • Luke Rasmussen
  • Marla Gorges
  • Matt Spotnitz
  • Sarah Seager
  • Seng Chan You
  • Trey Schneider
  • Vojtech Huser

Meeting Schedule:
Every First Tuesday at 11am EST

Next Monthly Meeting:
Tuesday (3/3) from 11-12 EST.

Meeting Link:
https://gatech.webex.com/gatech/j.php?MTID=mdd4af3e9b84212fc7df3eb0150703df5

Audio Connection:
+1-415-655-0001 US TOLL

Access Code:
739 712 554

WG Presentations

Jan 15, 2019
Aaron Potvien - Gold Standard Phenotype Library

Jan 16, 2019
Seng Chan You - Clinical Narrative Review
Joel Swerdel - Phenotype Algorithm Validation

Jan 29, 2019
Juan Banda - Computable Phenotype Design

Feb 12, 2019
Aaron Potvien - Library Architecture and Implementation

Mar 26, 2019
Juan Banda - FAIR Principles
Aaron Potvien - Library Architecture and Implementation: Progress Update and Next Steps

Apr 2, 2019
Aaron Potvien - Community Call Progress Update

Sept 3, 2019
Aaron Potvien - Community Call Progress Update

Documentation

Documentation of our journey to meet our objective is below.

* Forum Discussion

* Architecture Overview

* Requirements Document

* Technical Specifications

* Phenotype Submission Shiny Application