This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision | ||
projects:workgroups:wg_meeting_01092019 [2019/02/11 22:53] anu_gururaj2 [2019 Aims] |
projects:workgroups:wg_meeting_01092019 [2019/02/11 23:37] (current) anu_gururaj2 [Enterprise NLP needs] |
||
---|---|---|---|
Line 20: | Line 20: | ||
===== 2019 Aims ===== | ===== 2019 Aims ===== | ||
- | * Establish ETL, practical issues and lessons learnt during ETL for processing textual data into CDM | + | * Evaluate and revise textual CDM tables by sharing practical issues and lessons learnt during ETL for processing textual data into CDM |
* Develop tools (within Atlas) to facilitate uses of NLP data for cohort building/phenotyping | * Develop tools (within Atlas) to facilitate uses of NLP data for cohort building/phenotyping | ||
- Collaborate with eMERGE consortium: | - Collaborate with eMERGE consortium: | ||
Line 26: | Line 26: | ||
* Conduct cross-site studies that use textual data | * Conduct cross-site studies that use textual data | ||
* Continue developing other NLP resources | * Continue developing other NLP resources | ||
+ | |||
+ | ===== Ongoing Projects ===== | ||
+ | * Mapping of Note Types to LOINC/standard vocabulary – Karthik Natarajan, Ruth Reeves, and Jon Duke | ||
+ | - Karthik hopes to start working on this again, last progress was an evaluation against rule based system with Med (naive Bayes approach) | ||
+ | - Notes shared with Jon, loaded report names and generated n-grams, need to be tagged per ideas for mapping, Karthik to find somebody to tag/annotate, not accounting yet for linking them back to OMOP vocabulary, note-type needs to be standardized, the LOINC document ontology and Radlax are flattened here, both Note_type and Note_class are present, needs to be reviewed, leverage Jon's tool here | ||
+ | * Landscape Analysis of section identifier systems and proposal of a standard terminology for use – Hua Xu and Karthik Natarajan | ||
+ | - use SecTagger?, no other updates, Mitre has a tool called Zoner, need to review current Section Header tools, Stephane will share the terminology he has | ||
+ | * Mapping of CUIs to standard terminology – Juan Banda, need to add link to Juan's repo in the OHDSI NLP repo | ||
+ | * Standardization of term_modifiers and values – Hua Xu | ||
+ | |||
+ | ===== Presentation ===== | ||
+ | ==== Enterprise NLP needs ==== | ||
+ | * Fast deployment of NLP solutions through | ||
+ | - Task scheduling | ||
+ | - Resource management (distributed, scalable) | ||
+ | * Visual Analytics | ||
+ | - Search NLP outputs | ||
+ | - Extract information for research – phenotyping | ||
+ | * Enhanced security | ||
+ | - Multi-user | ||
+ | - Configurable | ||
+ | * Demo by Ergin Soysal | ||