projects:workgroups:themis:focusgroup3
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projects:workgroups:themis:focusgroup3 [2017/10/26 02:54] cgreich |
projects:workgroups:themis:focusgroup3 [2018/10/31 14:45] (current) galiat |
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| + | ** Group Leader:** Asha Mahesh | ||
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| + | **[[projects:workgroups:themis:focusgroup3members|Members]]** | ||
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| + | **THEMIS Bi-weekly Meeting (Skype Meeting)** | ||
| + | Occurs every other Tuesday from 10:00 AM to 11:00 AM. | ||
| + | |||
| + | **[[https://meet.lync.com/quintiles-quintilesims/mui.vanzandt/7Z24VJ8Z|Join Skype Meeting]]** | ||
| + | **[[https://meet.lync.com/quintiles-quintilesims/mui.vanzandt/7Z24VJ8Z|https://meet.lync.com/quintiles-quintilesims/mui.vanzandt/7Z24VJ8Z]]** | ||
| + | |||
| + | Join by phone | ||
| + | Toll number: +1 (646) 838-2458,,88328055# (Dial-in Number) English (United States) | ||
| + | Conference ID: 88328055 | ||
| + | |||
| + | **Meeting Minutes:** | ||
| + | |||
| + | Meeting notes from Nov 29th: | ||
| + | |||
| + | - Team discussed several items on the issue list | ||
| + | - Schedule follow up meeting for further discussion. Observe the efficiency of remote/webex meeting and make a decision to meet in-person as needed | ||
| + | - Please review the spreadsheet and socialize discussed topics on OHDSI forums to gather input | ||
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| ^Issue^Options^ | ^Issue^Options^ | ||
| - | |CONDITION|| | + | |**Generic**|| |
| + | |Low quality records, e.g. CPRD "researchable patient" flag|Kick out/create variable for CDM WG| | ||
| + | |Data inclusion|Create summary guideline, report % loss| | ||
| + | |Start Date before Observation Period|History of/First date of Observation Period| | ||
| + | |End Date - same day issue|Special times (0.00 and 23.59)/Blank| | ||
| + | |Socioeconomic, marital, language Concepts|Create conventions for Concepts| | ||
| + | |Flavors of 0|Document| | ||
| + | |Source Value combo code+vocab|Concatenate/Leave blank and use Source Concept| | ||
| + | |Source Value combo more than one|Concatenate/Leave blank and use Source Concept| | ||
| + | |Source Value combo code+name|Concatenate/Leave blank and use Source Concept| | ||
| + | |Source Concepts for local variables|Abolish SOURCE_TO_CONCEPT_MAP and develop guidelines for creating Source Concepts >2B| | ||
| + | |Source Concept=0 for Achilles|make not nullable for OMOP CDM| | ||
| + | |Negative integers|Develop guideline| | ||
| + | |Invalid numbers|Develop guidelines| | ||
| + | |**CONDITION**|| | ||
| |Concepts privacy issues|Data deleted for privacy in record/Mark deletions in metadata/Establish Black List/Remove patients entirely/Set to 0| | |Concepts privacy issues|Data deleted for privacy in record/Mark deletions in metadata/Establish Black List/Remove patients entirely/Set to 0| | ||
| |Convert data from surveys?|Keep in Observation/Add, with explicit Type Concept| | |Convert data from surveys?|Keep in Observation/Add, with explicit Type Concept| | ||
| Line 8: | Line 46: | ||
| |Visit_occurrence_id mandatory?| | | |Visit_occurrence_id mandatory?| | | ||
| |ICD Source value: With or without dots|Irrelevant with mandatory Source Concepts| | |ICD Source value: With or without dots|Irrelevant with mandatory Source Concepts| | ||
| - | ||| | + | |**DRUG**|| |
| - | ||| | + | |Duplicates for same day|Don't dedup| |
| - | ||| | + | |End date guessing for prescribed, administered, mail-ordered| | |
| - | ||| | + | |Sig|Clean up and develop standard| |
| - | ||| | + | |Contradiction between Sig, end date, days supply, amount|ETLer's problem| |
| - | ||| | + | |Dose Era logic| | |
| - | ||| | + | |Patient reported drugs|Use| |
| - | ||| | + | |Stop reason|Consider abolishing after polling| |
| - | ||| | + | |Link between orders, administration, dispensing and filling|Publish guidelines| |
| - | ||| | + | |HCPCS and NDC on same line|Consider heuristic for picking| |
| - | ||| | + | |J code units|Consider placing in quantity field| |
| - | ||| | + | |NDC9 to 11 mapping contradictions|Consider polling and vocab fix| |
| - | ||| | + | |NDC non-unique Concepts over time|Create Black List| |
| - | ||| | + | |
projects/workgroups/themis/focusgroup3.1508986492.txt.gz · Last modified: 2017/10/26 02:54 by cgreich
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