documentation:oncology:proposals
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| + | ** Documentation Planning ** | ||
| + | * {{ :documentation:oncology:Oncology_Documentation_Scope.docx | Oncology Documentation Scope (Word document)}} | ||
| + | |||
| **PROJECT PLANNING** | **PROJECT PLANNING** | ||
| - | * {{https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?ok=0f560d&&media=https://github.com/OHDSI/OncologyWG/issues | Current Task List}} | + | * {{https://github.com/OHDSI/OncologyWG/issues | Current Task List}} |
| + | * {{https://github.com/OHDSI/OncologyWG/wiki/Cancer-registry-uses-cases | List of Use Cases}} | ||
| - | **Oncology WG Products** | + | **ONCOLOGY WG PRODUCTS** |
| - | *OMOP CDM Oncology Module* | + | __OMOP CDM Oncology Module__ |
| - | - {{https://github.com/OHDSI/CommonDataModel/files/2589698/Oncology.CDM.Proposal.2018-11-15.pdf| OMOP CDM Oncology Extension (Complete PDF)}} | + | * {{https://github.com/OHDSI/CommonDataModel/files/2589698/Oncology.CDM.Proposal.2018-11-15.pdf| OMOP CDM Oncology Extension (Complete PDF)}} |
| - | - {{ :documentation:oncology:oncology_cdm_proposal_part_i_2018-12-02.pptx | Part 1: "Oncology Extension Summary" (Power Point presentation)}} | + | * {{ :documentation:oncology:oncology_cdm_proposal_part_i_2018-12-02.pptx | Part 1: "Oncology Extension Summary" (Power Point presentation)}} |
| - | - {{ :documentation:oncology:oncology_cdm_proposal_part_2_2018-12-02.docx | Part 2: "Oncology Extension Detailed" (Word document)}} | + | * {{ :documentation:oncology:oncology_cdm_proposal_part_2_2018-12-02.docx | Part 2: "Oncology Extension Detailed" (Word document)}} |
| - | *OMOP CDM Extension Implementing Oncology Module* | + | __OMOP CDM Extension Implementing Oncology Module__ |
| - | *ETL Instructions for converting Tumor Registry Data to OMOP* | + | * {{https://github.com/OHDSI/OncologyWG/tree/master/ddl|DDL for EPISODE, EPISODE_EVENT and MEASUREMENT tables}} |
| - | - {{https://github.com/OHDSI/OncologyWG/wiki/ETL-Instructions-for-Mapping-ICDO-to-SNOMED|ETL Instructions for Mapping ICD-O diagnoses to SNOMED}} | + | |
| - | - {{https://github.com/OHDSI/OncologyWG/wiki/ETL-Instructions-for-Mapping-NAACCR-Treatment-Data-into-the-OMOP-CDM | ETL Instructions for Mapping NAACCR Treatment Data into the OMOP-CDM}} - in progress | + | |
| - | - {{https://github.com/OHDSI/OncologyWG/tree/master/ddl | DDL for EPISODE, EPISODE_EVENT and MEASUREMENT tables}} | + | |
| - | * **Work In-Progress** | + | __ETL Instructions for converting Tumor Registry Data to OMOP__ |
| - | * {{https://github.com/OHDSI/OncologyWG/issues/6#issuecomment-448066877| Ingestion of NAACCR into the OMOP vocabulary}} - in progress | + | * {{https://github.com/OHDSI/OncologyWG/blob/master/documentation/NAACCR - OMOP Diagnosis Crosswalk.pdf|Crosswalk from Tumor Registry to OMOP}} |
| + | * {{https://github.com/OHDSI/OncologyWG/blob/master/documentation/NAACCR%20ETL%20Steps.docx?raw=true|High Level ETL Steps}} | ||
| + | * {{https://github.com/OHDSI/OncologyWG/wiki/ETL-Instructions-for-Mapping-ICDO-to-SNOMED|ETL Instructions for Mapping ICD-O diagnoses to SNOMED}} | ||
| + | *{{https://github.com/OHDSI/OncologyWG/blob/master/documentation/NAACCR.Ingestion.into.OMOP.Vocabulary.-.Diagnostic.Modifiers.docx|ETL of NAACCR diagnosis and diagnostic modifiers}} | ||
| + | * {{https://github.com/OHDSI/OncologyWG/issues/6| Ingestion of NAACCR into the OMOP vocabulary | ||
| + | }} | ||
| + | |||
| + | |||
| + | |||
| + | ** WORK IN-PROGRESS ** | ||
| * {{https://github.com/OHDSI/OncologyWG/issues/25| Proposal for Ingestion of NAACCR into OMOP Vocabulary - Diagnostic Modifiers}} - in progress | * {{https://github.com/OHDSI/OncologyWG/issues/25| Proposal for Ingestion of NAACCR into OMOP Vocabulary - Diagnostic Modifiers}} - in progress | ||
| **PUBLICATIONS AND PRESENTATIONS BY WG MEMBERS** | **PUBLICATIONS AND PRESENTATIONS BY WG MEMBERS** | ||
| - | * {{ :documentation:oncology:oncology_cdm_proposal_part_i_2018-12-02.pptx | OHDSI CDM Wokgroup, Dec 2018: "Oncology Extension Presentation"}} | + | |
| - | * {{ :documentation:oncology:amia_2018_s77_panel.pptx | AMIA 2018: panel "Data Standardization in Cancer: Challenges and Opportunities"}} | + | * {{https://www.ohdsi.org/2019-us-symposium-showcase-27/ | OMOP CDM Oncology Module at Work }} |
| - | * {{ :documentation:oncology:ohdsi_2018_european_symposium_poster.pdf | OHDSI 2018 European Symposium: poster "Improvement of cancer diagnosis representation in OMOP CDM" }} | + | * {{https://www.ohdsi.org/2019-us-symposium-showcase-11/|HemOnc: A New Standard Vocabulary for Oncology Drug Regimen Representation in the OMOP Common Data Model}} |
| - | * {{ :documentation:oncology:ohdsi_2018_symposium_poster.pdf | OHDSI 2018 Symposium: poster "SNOMED Extensions"}} | + | * {{https://www.ohdsi.org/2019-us-symposium-showcase-12/ | Conversion of Diagnosis and Chemotherapy Data in Electronic Health Records to Episode-based Oncology Extension of OMOP-CDM }} |
| - | * {{ :documentation:oncology:state_of_collaborative_address_-_rimma_belenkaya.pptx | 2018 OHDSI State of Collaborative: presentation}} | + | * {{https://www.ncbi.nlm.nih.gov/pubmed/31238109 | HemOnc: A new standard vocabulary for chemotherapy regimen representation in the OMOP common data model}} |
| - | * {{:documentation:oncology:oncology_data_standardization_challenges_2017-11-17.docx| 2017 Report to NCI: "Oncology Data Representation Challenges"}} | + | * {{https://www.ncbi.nlm.nih.gov/pubmed/31438365 |Standardized Observational Cancer Research Using the OMOP CDM Oncology Module}} |
| + | *{{https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:oncology:amia_2018_s77_panel.pptx|AMIA 2018: panel "Data Standardization in Cancer: Challenges and Opportunities"}} | ||
| + | |||
| + | *{{https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:oncology:ohdsi_2018_european_symposium_poster.pdf|OHDSI 2018 European Symposium: poster "Improvement of cancer diagnosis representation in OMOP CDM"}} | ||
| + | |||
| + | *{{https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:oncology:ohdsi_2018_symposium_poster.pdf|OHDSI 2018 Symposium: poster "SNOMED Extensions"}} | ||
| + | |||
| + | *{{https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:oncology:state_of_collaborative_address_-_rimma_belenkaya.pptx|2018 OHDSI State of Collaborative: presentation}} | ||
| + | *{{https://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:oncology:oncology_data_standardization_challenges_2017-11-17.docx|2017 Report to NCI: "Oncology Data Representation Challenges"}} | ||
| **[[documentation:oncology:archive|References and Archive]]** | **[[documentation:oncology:archive|References and Archive]]** | ||
| + | |||
| + | * {{ :documentation:oncology:2019-12-06_08.59.29_oncology_wg_-_genomic_subgroup_meeting_412862164.zip | Genomic Recording (zip)}} | ||
documentation/oncology/proposals.1572384562.txt.gz · Last modified: 2019/10/29 21:29 by sratwani
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