documentation:next_cdm:add_survey
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documentation:next_cdm:add_survey [2017/06/19 15:48] cmkerr |
documentation:next_cdm:add_survey [2017/08/01 18:08] (current) clairblacketer |
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| ===== Adding PROM data to CDM ===== | ===== Adding PROM data to CDM ===== | ||
| + | ===Proposals now housed on github=== | ||
| + | [[https://github.com/OHDSI/CommonDataModel/issues/90|link to github]] | ||
| + | |||
| * Requestor: Colin Orr and Catherine Kerr, ICON plc | * Requestor: Colin Orr and Catherine Kerr, ICON plc | ||
| * Revising party: Joshua Ransom, Anna Corning, Emelly Rusli, Rayhnuma Ahmed, Aaron Stern; SHYFT Analytics | * Revising party: Joshua Ransom, Anna Corning, Emelly Rusli, Rayhnuma Ahmed, Aaron Stern; SHYFT Analytics | ||
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| === RESPONSE table === | === RESPONSE table === | ||
| - | Will be added here. | + | ^ Field ^ Required ^ Type ^ Description ^ |
| + | | RESPONSE_OCCURRENCE_ID | Yes | integer | Unique identifier for each response. | | ||
| + | | PERSON_ID | Yes | integer | A foreign key identifier to the Person in the PERSON table about whom the response was recorded. | | ||
| + | | SURVEY_OCCURRENCE_ID | Yes | integer | A foreign key to SURVEY table about which survey the question and response occurred. | | ||
| + | | QUESTION_CONCEPT_ID | Yes | integer | A foreign key that refers to a question Concept identifier in the Standardized Vocabularies | | ||
| + | | QUESTION_SOURCE_VALUE | No | varchar(255) | The question as it appears in the source data. This code is mapped to a Standard Concept in the Standardized Vocabularies and the original code is, stored here for reference. | | ||
| + | | RESPONSE_DATE | Yes | date | Date on which the response was recorded | | ||
| + | | RESPONSE_DATETIME | No | datetime | Date and time on which the response was recorded | | ||
| + | | RESPONSE_AS_CONCEPT_ID | Yes | integer | Foreign key that refers to a response Concept identifier in the Standardized Vocabularies | | ||
| + | | RESPONSE _AS_STRING | No | varchar(255) | The response stored as a string. This is applicable to questions where the result is expressed as verbatim text. | | ||
| + | | RESPONSE _AS_NUMBER | No | float | The response stored as a number. This is applicable to questions where the result is expressed as a numeric value. | | ||
| + | | RESPONSE_AS_DATETIME | No | datetime | The response stored as a datetime. This is applicable to questions where the result is expressed as a historical date/time. | | ||
| + | | RESPONSE_RANGE_LOW | No | varchar(50) | The lowest value of the range of responses for the question. | | ||
| + | | RESPONSE_RANGE_HIGH | No | varchar(50) | The highest value of the range of responses for the question | | ||
| ==== Use Cases ==== | ==== Use Cases ==== | ||
| Line 60: | Line 76: | ||
| === CONCEPT table - example === | === CONCEPT table - example === | ||
| - | ^ CONCEPT_ID ^ CONCEPT_NAME ^ DOMAIN_ID ^ VOCABULARY_ID ^ CONCEPT_CLASS_ID ^ STANDARD_CONCEPT ^ CONCEPT_CODE ^ | + | ^ CONCEPT_ID ^ CONCEPT _NAME ^ DOMAIN_ID ^ VOCABULARY_ID ^ CONCEPT_ CLASS_ID ^ STANDARD _CONCEPT ^ CONCEPT _CODE ^ |
| | 2020 | HPS1 | Metadata | Domain | Domain | | ICHOM generated | | | 2020 | HPS1 | Metadata | Domain | Domain | | ICHOM generated | | ||
| | 2021 | None | HPS1 | ICHOM Observation | PRO Measure | S | 0 | | | 2021 | None | HPS1 | ICHOM Observation | PRO Measure | S | 0 | | ||
| Line 73: | Line 89: | ||
| ^ Column ^ Value ^ Comment ^ | ^ Column ^ Value ^ Comment ^ | ||
| - | | SURVEY_ID | 19073 | | | + | | SURVEY_OCCURRENCE_ID | 19073 | | |
| | SURVEY_CONCEPT_ID | 3501 | Concept for HOOSPS survey | | | SURVEY_CONCEPT_ID | 3501 | Concept for HOOSPS survey | | ||
| | PERSON_ID | 21405 | | | | PERSON_ID | 21405 | | | ||
| - | | VISIT_OCCURRENCE_ID | 13403 | ID of visit during which treatment was carried out | | + | | VISIT_OCCURRENCE_ID | 13403 | | |
| | SURVEY_DATE | 2016-07-14 | | | | SURVEY_DATE | 2016-07-14 | | | ||
| - | | ASSISTED_IND_CONCEPT_ID | 3601 | Concept for "Completed without assistance" | | + | | ASSISTANCE_CONCEPT_ID | 3601 | Concept for "Completed without assistance" | |
| - | | ASSISTED_IND | 1 | ICHOM value for "Completed without assistance" | | + | | ASSISTANCE_SOURCE_VALUE | 1 | ICHOM value for "Completed without assistance" | |
| - | | DATA_SOURCE_CONCEPT_ID | 3611 | Concept for "Patient-reported" | | + | | SURVEY_RECORDER_CONCEPT_ID | 3611 | Concept for "Patient-reported" | |
| - | | DATA_SOURCE | 3 | ICHOM value for "Patient-reported" | | + | | SURVEY_RECORDER_SOURCE_VALUE | 3 | ICHOM value for "Patient-reported" | |
| | TIMING_CONCEPT_ID | 3621 | Concept for "BASELINE" timing | | | TIMING_CONCEPT_ID | 3621 | Concept for "BASELINE" timing | | ||
| | TIMING_SOURCE_VALUE | BASELINE | | | | TIMING_SOURCE_VALUE | BASELINE | | | ||
| | COLLECTION_METHOD_CONCEPT_ID | 3631 | Concept for "Electronic questionnaire" | | | COLLECTION_METHOD_CONCEPT_ID | 3631 | Concept for "Electronic questionnaire" | | ||
| - | | COLLECTION_METHOD | 3 | ICHOM value for "Electronic questionnaire" | | + | | COLLECTION_METHOD_SOURCE_VALUE | 3 | ICHOM value for "Electronic questionnaire" | |
| - | | DURATION | 00:07:45 | Patient took 7 minutes and 45 seconds to complete online survey | | + | | DURATION_TIME | 00:07:45 | Patient took 7 minutes and 45 seconds to complete online survey | |
| - | | SURVEY_SOURCE_VALUE | HS001234 | | | + | | SURVEY_SOURCE_VALUE | HOOSPS | | |
| - | | SURVEY_NAME | HOOSPS | | | + | | SURVEY_SOURCE_IDENTIFIER | HS001234 | | |
| + | | VALIDATED_SURVEY_CONCEPT_ID | 3701 | Concept for "Validated survey" | | ||
| + | | VALIDATED_SURVEY_SOURCE_VALUE | 1 | ICHOM value for "Validated Survey" | | ||
| - | === OBSERVATION table - example === | + | === RESPONSE table - example === |
| ^ Column ^ Value ^ Comment ^ | ^ Column ^ Value ^ Comment ^ | ||
| - | | OBSERVATION_ID | 794657 | | | + | | RESPONSE_OCCURRENCE_ID | 794657 | | |
| | PERSON_ID | 21405 | | | | PERSON_ID | 21405 | | | ||
| - | | OBSERVATION_CONCEPT_ID | 2020 | Concept for HPS1 | | + | | SURVEY_OCCURRENCE_ID | 19073 | | |
| - | | OBSERVATION_DATE | 2016-07-14 | | | + | | QUESTION_CONCEPT_ID | 2020 | Concept for HPS1 | |
| - | | OBSERVATION_DATETIME | | | | + | | QUESTION_SOURCE_VALUE | HPS1 | | |
| - | | OBSERVATION_TYPE_CONCEPT_ID | 1001 | Concept for 'PRO Measure' | | + | | RESPONSE_DATE | 2016-07-14 | | |
| - | | VALUE_AS_NUMBER | | | | + | | RESPONSE_DATETIME | | | |
| - | | VALUE_AS_STRING | | | | + | | RESPONSE_AS_CONCEPT_ID | 2023 | Concept for "Moderate" | |
| - | | VALUE_AS_CONCEPT_ID | 2023 | Concept for "Moderate" | | + | | RESPONSE _AS_STRING | | | |
| - | | QUALIFIER_CONCEPT_ID | | | | + | | RESPONSE _AS_NUMBER | | | |
| - | | UNIT_CONCEPT_ID | | | | + | | RESPONSE_AS_DATETIME | | | |
| - | | PROVIDER_ID | | | | + | | RESPONSE_RANGE_LOW | 0 | | |
| - | | VISIT_OCCURRENCE_ID | 13403 | | | + | | RESPONSE_RANGE_HIGH | 4 | | |
| - | | OBSERVATION_SOURCE_VALUE | | | | + | |
| - | | OBSERVATION_SOURCE_CONCEPT_ID | | | | + | |
| - | | UNIT_SOURCE_VALUE | | | | + | |
| - | | QUALIFIER_SOURCE_VALUE | | | | + | |
| - | | SURVEY_ID | 19073 | | | + | |
| - | | TIMING_CONCEPT_ID | 3621 | | | + | |
| - | | TIMING_SOURCE_VALUE | BASELINE | | | + | |
documentation/next_cdm/add_survey.1497887332.txt.gz · Last modified: 2017/06/19 15:48 by cmkerr
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