projects:workgroups:wg_meeting_02032016
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projects:workgroups:wg_meeting_02032016 [2016/03/07 21:29] anu_gururaj |
projects:workgroups:wg_meeting_02032016 [2016/03/07 21:42] anu_gururaj |
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| ==== Agenda ==== | ==== Agenda ==== | ||
| - | -IRB for use of clinical text | + | - Minimal Model Presentation – Alex |
| - | -Clinical text data storage and representation schema | + | - Note-type mapping Presentation – Karthik |
| - | -NLP tools/pipelines for ETL | + | - Share existing ontologies from Vanderbilt (Hua) and Regenstrief (Jon) |
| - | -Use cases, e.g, phenotyping for cohort selection using NLP outputs | + | - Share strategies for combining data from different searches – Jon |
| - | -Discussion | + | - Report on WG for commenting – Hua |
| + | - Wrappers for cTAKES and Metamap – Min | ||
| + | - Improvements to search engine set up using MT samples – Min | ||
| + | - Textual Data Representation – Discussion | ||
| + | - Goals of 2016 | ||
| + | - Change of meeting time | ||
| ===Minutes=== | ===Minutes=== | ||
| - | - General IRB document for use of clinical text and approval from all contributors, post online - Almost completed | + | - Minimal model presentation - Alex |
| + | - the model is based on the SHARE-N model and adapted to the current data structure. This model incorporates other semantic types and all of the modifiers are not available in cTAKES yet. | ||
| + | - the notes were processed from eMERGE cohort at Columbia with about 60,000 notes encompassing 1700 patients. The original patient number was 3200. | ||
| + | - | ||
| - Collect minimum set of modifiers for all clinical entities that support use of rule to derive clinical concepts: Alex | - Collect minimum set of modifiers for all clinical entities that support use of rule to derive clinical concepts: Alex | ||
| * cTAKES is being run on clinical notes programmatically. Alex will present the minimal model in the next meeting. | * cTAKES is being run on clinical notes programmatically. Alex will present the minimal model in the next meeting. | ||
projects/workgroups/wg_meeting_02032016.txt · Last modified: 2016/03/09 20:31 by anu_gururaj
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